Characterization of the complete chloroplast genome of Actinidia hemsleyana


Xiaoqiong Q., Xiaodong X., Mingjuan Y., Atak A., Caihong Z., Dawei L.

MITOCHONDRIAL DNA PART B-RESOURCES, vol.6, no.11, pp.3259-3260, 2021 (SCI-Expanded) identifier identifier identifier

  • Publication Type: Article / Article
  • Volume: 6 Issue: 11
  • Publication Date: 2021
  • Doi Number: 10.1080/23802359.2021.1993100
  • Journal Name: MITOCHONDRIAL DNA PART B-RESOURCES
  • Journal Indexes: Science Citation Index Expanded (SCI-EXPANDED), Scopus, BIOSIS, CAB Abstracts, Veterinary Science Database
  • Page Numbers: pp.3259-3260
  • Keywords: Actinidia hemsleyana, chloroplast, endanger species, phylogenetic analysis
  • Bursa Uludag University Affiliated: Yes

Abstract

The completed chloroplast genome sequence of Actinidia hemsleyana, collected from eastern China, was firstly determined using next-generation sequencing (NGS) and bioinformatic analysis. The length of cp genome was 156,845 bp, including a large single-copy (LSC) region of 88,666 bp and a small single-copy (SSC) region of 20,543 bp, which were separated by a pair of inverted repeats (IRs) of 23,818 bp. The cp genome contained 132 genes, including 83 protein-coding genes, 41 tRNA genes, and 8 rRNA genes. The overall GC content was 37.19%, whereas the corresponding values of the LSC, SSC, and IR regions were 35.46%, 31.09%, and 43.06%, respectively. Phylogenetic analysis based on whole cp genome sequences of 20 Actinidia species showed that A. hemsleyana has the closest relationship with A.latifolia.